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Port details
apbs Electrostatic and solvation properties for complex molecules
1.5.102 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.5.102Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-05-03 06:15:17
Last Update: 2020-08-27 19:38:00
SVN Revision: 546396
License: MIT
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (724 items)
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  1. @ldconfig
  2. /usr/local/share/licenses/apbs-1.5.102/catalog.mk
  3. /usr/local/share/licenses/apbs-1.5.102/LICENSE
  4. /usr/local/share/licenses/apbs-1.5.102/MIT
  5. bin/apbs
  6. include/apbs/apbs.h
  7. include/apbs/generic/apolparm.h
  8. include/apbs/generic/bemparm.h
  9. include/apbs/generic/femparm.h
  10. include/apbs/generic/geoflowparm.h
  11. include/apbs/generic/mgparm.h
  12. include/apbs/generic/nosh.h
  13. include/apbs/generic/pbamparm.h
  14. include/apbs/generic/pbeparm.h
  15. include/apbs/generic/pbsamparm.h
  16. include/apbs/generic/vacc.h
  17. include/apbs/generic/valist.h
  18. include/apbs/generic/vatom.h
  19. include/apbs/generic/vcap.h
  20. include/apbs/generic/vclist.h
  21. include/apbs/generic/vgreen.h
  22. include/apbs/generic/vhal.h
  23. include/apbs/generic/vmatrix.h
  24. include/apbs/generic/vparam.h
  25. include/apbs/generic/vpbe.h
  26. include/apbs/generic/vstring.h
  27. include/apbs/generic/vunit.h
  28. include/apbs/mg/vgrid.h
  29. include/apbs/mg/vmgrid.h
  30. include/apbs/mg/vopot.h
  31. include/apbs/mg/vpmg.h
  32. include/apbs/mg/vpmgp.h
  33. include/apbs/pmgc/buildAd.h
  34. include/apbs/pmgc/buildBd.h
  35. include/apbs/pmgc/buildGd.h
  36. include/apbs/pmgc/buildPd.h
  37. include/apbs/pmgc/cgd.h
  38. include/apbs/pmgc/gsd.h
  39. include/apbs/pmgc/matvecd.h
  40. include/apbs/pmgc/mgcsd.h
  41. include/apbs/pmgc/mgdrvd.h
  42. include/apbs/pmgc/mgfasd.h
  43. include/apbs/pmgc/mgsubd.h
  44. include/apbs/pmgc/mikpckd.h
  45. include/apbs/pmgc/mlinpckd.h
  46. include/apbs/pmgc/mypdec.h
  47. include/apbs/pmgc/newdrvd.h
  48. include/apbs/pmgc/newtond.h
  49. include/apbs/pmgc/powerd.h
  50. include/apbs/pmgc/smoothd.h
  51. include/apbs/routines.h
  52. include/maloc/maloc.h
  53. include/maloc/maloc_base.h
  54. include/maloc/psh.h
  55. include/maloc/vcom.h
  56. include/maloc/vio.h
  57. include/maloc/vmem.h
  58. include/maloc/vmp.h
  59. include/maloc/vmpi.h
  60. include/maloc/vnm.h
  61. include/maloc/vpred.h
  62. include/maloc/vset.h
  63. include/maloc/vsh.h
  64. include/maloc/vsys.h
  65. lib/libapbs_generic.so
  66. lib/libapbs_mg.so
  67. lib/libapbs_pmgc.so
  68. lib/libapbs_routines.so
  69. lib/libmaloc.so
  70. share/apbs/doc/ChangeLog.md
  71. share/apbs/doc/README
  72. share/apbs/doc/ReleaseNotes.md
  73. share/apbs/doc/data-ontology/README.md
  74. share/apbs/doc/data-ontology/catalog-v001.xml
  75. share/apbs/doc/data-ontology/data-ontology.ttl
  76. share/apbs/doc/data-ontology/protege.sh
  77. share/apbs/doc/icons/APBS_1024.png
  78. share/apbs/doc/icons/APBS_128.png
  79. share/apbs/doc/icons/APBS_128_v2.png
  80. share/apbs/doc/icons/APBS_16.png
  81. share/apbs/doc/icons/APBS_256.png
  82. share/apbs/doc/icons/APBS_32.png
  83. share/apbs/doc/icons/APBS_512.png
  84. share/apbs/doc/icons/APBS_64.png
  85. share/apbs/doc/license/LICENSE.txt
  86. share/apbs/doc/license/license.html
  87. share/apbs/doc/release_procedure.txt
  88. share/apbs/examples/FKBP/1d7h-dmso-complex.pqr
  89. share/apbs/examples/FKBP/1d7h-dmso-mol.in
  90. share/apbs/examples/FKBP/1d7h-dmso-smol.in
  91. share/apbs/examples/FKBP/1d7h-dmso/UHBD/1d7h-min.qcd
  92. share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.inp
  93. share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.log
  94. share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.oldlog
  95. share/apbs/examples/FKBP/1d7h-dmso/UHBD/dmso-min.qcd
  96. share/apbs/examples/FKBP/1d7h-dmso/UHBD/pqr2qcd
  97. share/apbs/examples/FKBP/1d7h-min.pqr
  98. share/apbs/examples/FKBP/1d7i-dss-complex.pqr
  99. share/apbs/examples/FKBP/1d7i-dss-mol.in
  100. share/apbs/examples/FKBP/1d7i-dss-smol.in
  101. share/apbs/examples/FKBP/1d7i-dss/UHBD/1d7i-min.qcd
  102. share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.inp
  103. share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.log
  104. share/apbs/examples/FKBP/1d7i-dss/UHBD/dss-min.qcd
  105. share/apbs/examples/FKBP/1d7i-min.pqr
  106. share/apbs/examples/FKBP/README.md
  107. share/apbs/examples/FKBP/dmso-min.pqr
  108. share/apbs/examples/FKBP/dss-min.pqr
  109. share/apbs/examples/README.md
  110. share/apbs/examples/actin-dimer/README.md
  111. share/apbs/examples/actin-dimer/UHBD/aheall-atom.charmm.dat
  112. share/apbs/examples/actin-dimer/UHBD/nuc.3-4.full.log
  113. share/apbs/examples/actin-dimer/UHBD/nuc.3-4.inp
  114. share/apbs/examples/actin-dimer/UHBD/prot3.pdb
  115. share/apbs/examples/actin-dimer/UHBD/prot4.pdb
  116. share/apbs/examples/actin-dimer/UHBD/single.inp
  117. share/apbs/examples/actin-dimer/UHBD/srsrf.dot
  118. share/apbs/examples/actin-dimer/apbs-mol-auto.in
  119. share/apbs/examples/actin-dimer/apbs-mol-parallel.in
  120. share/apbs/examples/actin-dimer/apbs-smol-auto.in
  121. share/apbs/examples/actin-dimer/apbs-smol-parallel.in
  122. share/apbs/examples/actin-dimer/complex.pqr
  123. share/apbs/examples/actin-dimer/mesh.m
  124. share/apbs/examples/actin-dimer/mol1.pqr
  125. share/apbs/examples/actin-dimer/mol2.pqr
  126. share/apbs/examples/alkanes/2-methylbutane.pdb
  127. share/apbs/examples/alkanes/Makefile.in
  128. share/apbs/examples/alkanes/README.md
  129. share/apbs/examples/alkanes/alkanes.in
  130. share/apbs/examples/alkanes/apbs-forces.in
  131. share/apbs/examples/alkanes/butane.pdb
  132. share/apbs/examples/alkanes/cyclohexane.pdb
  133. share/apbs/examples/alkanes/cyclopentane.pdb
  134. share/apbs/examples/alkanes/ethane.pdb
  135. share/apbs/examples/alkanes/force.result
  136. share/apbs/examples/alkanes/hexane.pdb
  137. share/apbs/examples/alkanes/isobutane.pdb
  138. share/apbs/examples/alkanes/methane.pdb
  139. share/apbs/examples/alkanes/mol.pdb
  140. share/apbs/examples/alkanes/neopentane.pdb
  141. share/apbs/examples/alkanes/parm.dat
  142. share/apbs/examples/alkanes/pentane.pdb
  143. share/apbs/examples/alkanes/propane.pdb
  144. share/apbs/examples/bem-binding-energy/1d30.in
  145. share/apbs/examples/bem-binding-energy/1d30_monomer1.in
  146. share/apbs/examples/bem-binding-energy/1d30_monomer2.in
  147. share/apbs/examples/bem-binding-energy/README.md
  148. share/apbs/examples/bem-binding-energy/test_proteins/1d30.pqr
  149. share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer1.pqr
  150. share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer2.pqr
  151. share/apbs/examples/bem-pKa/2LZT-ASH66.in
  152. share/apbs/examples/bem-pKa/2LZT-ASP66.in
  153. share/apbs/examples/bem-pKa/2LZT-noASH66.in
  154. share/apbs/examples/bem-pKa/2LZT-noASP66.in
  155. share/apbs/examples/bem-pKa/ASH66.in
  156. share/apbs/examples/bem-pKa/ASP66.in
  157. share/apbs/examples/bem-pKa/README.md
  158. share/apbs/examples/bem-pKa/test_proteins/2LZT-ASH66.pqr
  159. share/apbs/examples/bem-pKa/test_proteins/2LZT-ASP66.pqr
  160. share/apbs/examples/bem-pKa/test_proteins/2LZT-noASH66.pqr
  161. share/apbs/examples/bem-pKa/test_proteins/2LZT-noASP66.pqr
  162. share/apbs/examples/bem-pKa/test_proteins/ASH66.pqr
  163. share/apbs/examples/bem-pKa/test_proteins/ASP66.pqr
  164. share/apbs/examples/bem/1a63_NanoShaper_SES.in
  165. share/apbs/examples/bem/1a63_NanoShaper_Skin.in
  166. share/apbs/examples/bem/1a63_msms.in
  167. share/apbs/examples/bem/451c_order1.in
  168. share/apbs/examples/bem/451c_order5.in
  169. share/apbs/examples/bem/README.md
  170. share/apbs/examples/bem/test_proteins/1a63.pqr
  171. share/apbs/examples/bem/test_proteins/1ajj.pqr
  172. share/apbs/examples/bem/test_proteins/1bbl.pqr
  173. share/apbs/examples/bem/test_proteins/451c.pqr
  174. share/apbs/examples/bem/test_proteins/oneb.pqr
  175. share/apbs/examples/bem/test_proteins/twob.pqr
  176. share/apbs/examples/bem/test_proteins/twob2.pqr
  177. share/apbs/examples/born/README.md
  178. share/apbs/examples/born/apbs-apolar.in
  179. share/apbs/examples/born/apbs-forces.in
  180. share/apbs/examples/born/apbs-mol-auto.in
  181. share/apbs/examples/born/apbs-mol-fem-extmesh.in
  182. share/apbs/examples/born/apbs-mol-fem.in
  183. share/apbs/examples/born/apbs-mol-parallel.in
  184. share/apbs/examples/born/apbs-smol-auto.in
  185. share/apbs/examples/born/apbs-smol-fem.in
  186. share/apbs/examples/born/apbs-smol-parallel.in
  187. share/apbs/examples/born/apolarforces
  188. share/apbs/examples/born/ion.pqr
  189. share/apbs/examples/born/ion.xml
  190. share/apbs/examples/born/mesh.m
  191. share/apbs/examples/born/parm.dat
  192. share/apbs/examples/born/pmf.dat
  193. share/apbs/examples/born/polarforces
  194. share/apbs/examples/geoflow/1a63.in
  195. share/apbs/examples/geoflow/1a63.pqr
  196. share/apbs/examples/geoflow/README.md
  197. share/apbs/examples/geoflow/gly.pdb
  198. share/apbs/examples/geoflow/gly.pqr
  199. share/apbs/examples/geoflow/glycerol.in
  200. share/apbs/examples/geoflow/imidazole.in
  201. share/apbs/examples/geoflow/imidazole_zap.pqr
  202. share/apbs/examples/hca-bind/README.md
  203. share/apbs/examples/hca-bind/UHBD/bindf-nmap.err
  204. share/apbs/examples/hca-bind/UHBD/bindf-nmap.inp
  205. share/apbs/examples/hca-bind/UHBD/bindf-nmap.out
  206. share/apbs/examples/hca-bind/UHBD/bindf.inp
  207. share/apbs/examples/hca-bind/UHBD/bindf.log
  208. share/apbs/examples/hca-bind/UHBD/bindf.out.orig
  209. share/apbs/examples/hca-bind/UHBD/bindf1.qcd
  210. share/apbs/examples/hca-bind/UHBD/bindf2.err
  211. share/apbs/examples/hca-bind/UHBD/bindf2.qcd
  212. share/apbs/examples/hca-bind/UHBD/srsrf.dot
  213. share/apbs/examples/hca-bind/acet.pqr
  214. share/apbs/examples/hca-bind/apbs-mol.in
  215. share/apbs/examples/hca-bind/apbs-smol.in
  216. share/apbs/examples/hca-bind/complex.pqr
  217. share/apbs/examples/hca-bind/hca.pqr
  218. share/apbs/examples/hca-bind/mesh.m
  219. share/apbs/examples/helix/Apbs_dummy-TEMPLATE.in
  220. share/apbs/examples/helix/Apbs_dummy.in
  221. share/apbs/examples/helix/Apbs_solv-TEMPLATE.in
  222. share/apbs/examples/helix/Membrane-helix-0.pqr
  223. share/apbs/examples/helix/Membrane-helix-12.pqr
  224. share/apbs/examples/helix/Membrane-helix-16.pqr
  225. share/apbs/examples/helix/Membrane-helix-4.pqr
  226. share/apbs/examples/helix/Membrane-helix-8.pqr
  227. share/apbs/examples/helix/Run_membrane-helix.sh
  228. share/apbs/examples/helix/draw_membrane2.c
  229. share/apbs/examples/ion-pmf/README.md
  230. share/apbs/examples/ion-pmf/apolarforces
  231. share/apbs/examples/ion-pmf/complex.in
  232. share/apbs/examples/ion-pmf/ion-pmf.in
  233. share/apbs/examples/ion-pmf/ion-pmf.pdb
  234. share/apbs/examples/ion-pmf/parm.dat
  235. share/apbs/examples/ion-pmf/polarforces
  236. share/apbs/examples/ion-pmf/runme.sh
  237. share/apbs/examples/ion-protein/491.pqr
  238. share/apbs/examples/ion-protein/README.md
  239. share/apbs/examples/ion-protein/UHBD/491.pdb
  240. share/apbs/examples/ion-protein/UHBD/small491.e2.log
  241. share/apbs/examples/ion-protein/UHBD/small491.inp
  242. share/apbs/examples/ion-protein/UHBD/small491.log
  243. share/apbs/examples/ion-protein/UHBD/small491.pdb
  244. share/apbs/examples/ion-protein/apbs-mol-pdiel12.in
  245. share/apbs/examples/ion-protein/apbs-mol-pdiel2.in
  246. share/apbs/examples/ion-protein/apbs-smol-pdiel12.in
  247. share/apbs/examples/ion-protein/apbs-smol-pdiel2.in
  248. share/apbs/examples/ion-protein/complex.pqr
  249. share/apbs/examples/ion-protein/small491.pqr
  250. share/apbs/examples/ionize/README.md
  251. share/apbs/examples/ionize/UHBD/elec.dat.exam
  252. share/apbs/examples/ionize/UHBD/elec.inp.exam
  253. share/apbs/examples/ionize/UHBD/elec.out.orig.exam
  254. share/apbs/examples/ionize/UHBD/elec.pdb.exam
  255. share/apbs/examples/ionize/acetate.pqr
  256. share/apbs/examples/ionize/acetate.xml
  257. share/apbs/examples/ionize/acetic-acid.pqr
  258. share/apbs/examples/ionize/acetic-acid.xml
  259. share/apbs/examples/ionize/apbs-mol.in
  260. share/apbs/examples/ionize/apbs-smol.in
  261. share/apbs/examples/ionize/proton.pqr
  262. share/apbs/examples/ionize/proton.xml
  263. share/apbs/examples/membrane/memv.in
  264. share/apbs/examples/membrane/pot.pqr
  265. share/apbs/examples/membrane/readme.md
  266. share/apbs/examples/misc/README.md
  267. share/apbs/examples/misc/achbp.pqr
  268. share/apbs/examples/misc/apbs-PDB.in
  269. share/apbs/examples/misc/apbs.in
  270. share/apbs/examples/misc/fas2.pqr
  271. share/apbs/examples/misc/mache.pqr
  272. share/apbs/examples/misc/param.dat
  273. share/apbs/examples/opal/README.md
  274. share/apbs/examples/opal/actin-complex.pqr
  275. share/apbs/examples/opal/actin-dimer-para.in
  276. share/apbs/examples/opal/actin-dimer.in
  277. share/apbs/examples/opal/actin-mol1.pqr
  278. share/apbs/examples/opal/actin-mol2.pqr
  279. share/apbs/examples/opal/born.xml
  280. share/apbs/examples/pbam/1a63.in
  281. share/apbs/examples/pbam/1a63.pqr
  282. share/apbs/examples/pbam/README.md
  283. share/apbs/examples/pbam/neg_1.xyz
  284. share/apbs/examples/pbam/neg_2.xyz
  285. share/apbs/examples/pbam/neg_3.xyz
  286. share/apbs/examples/pbam/neg_charge.pqr
  287. share/apbs/examples/pbam/pos_1.xyz
  288. share/apbs/examples/pbam/pos_2.xyz
  289. share/apbs/examples/pbam/pos_3.xyz
  290. share/apbs/examples/pbam/pos_charge.pqr
  291. share/apbs/examples/pbam/toy_dynamics.in
  292. share/apbs/examples/pbam/toy_electrostatic.in
  293. share/apbs/examples/pbam/toy_energyforce.in
  294. share/apbs/examples/pbsam-barn_bars/barn_bars_electro.in
  295. share/apbs/examples/pbsam-barn_bars/barnase.pqr
  296. share/apbs/examples/pbsam-barn_bars/barstar.pqr
  297. share/apbs/examples/pbsam-gly/README.md
  298. share/apbs/examples/pbsam-gly/gly.pqr
  299. share/apbs/examples/pbsam-gly/gly.vert
  300. share/apbs/examples/pbsam-gly/gly_cg.pqr
  301. share/apbs/examples/pbsam-gly/gly_cg2.pqr
  302. share/apbs/examples/pbsam-gly/gly_dynamics.in
  303. share/apbs/examples/pbsam-gly/gly_electrostatic.in
  304. share/apbs/examples/pbsam-gly/gly_energyforce.in
  305. share/apbs/examples/pbsam-gly/msms/gly_electrostatic.in
  306. share/apbs/examples/pbsam-gly/msms/gly_msms.pqr
  307. share/apbs/examples/pbsam-gly/traj_1_1.xyz
  308. share/apbs/examples/pbsam-gly/traj_1_2.xyz
  309. share/apbs/examples/pbsam-gly/traj_2_1.xyz
  310. share/apbs/examples/pbsam-gly/traj_2_2.xyz
  311. share/apbs/examples/pka-lig/README.md
  312. share/apbs/examples/pka-lig/UHBD/README
  313. share/apbs/examples/pka-lig/UHBD/uhbd1-apo.out
  314. share/apbs/examples/pka-lig/UHBD/uhbd1-bin.out
  315. share/apbs/examples/pka-lig/UHBD/uhbd1-lig.out
  316. share/apbs/examples/pka-lig/UHBD/uhbd2-apo.out
  317. share/apbs/examples/pka-lig/UHBD/uhbd2-bin.out
  318. share/apbs/examples/pka-lig/UHBD/uhbd2-lig.out
  319. share/apbs/examples/pka-lig/apbs-mol-surf.in
  320. share/apbs/examples/pka-lig/apbs-mol-vdw.in
  321. share/apbs/examples/pka-lig/apbs-smol-surf.in
  322. share/apbs/examples/pka-lig/apbs-smol-vdw.in
  323. share/apbs/examples/pka-lig/bx6_7_apo_apbs.pqr
  324. share/apbs/examples/pka-lig/bx6_7_bin_apbs.pqr
  325. share/apbs/examples/pka-lig/bx6_7_lig_apbs.pqr
  326. share/apbs/examples/point-pmf/README.md
  327. share/apbs/examples/point-pmf/apbs.in
  328. share/apbs/examples/point-pmf/complex-0_1.in
  329. share/apbs/examples/point-pmf/complex-0_1.pqr
  330. share/apbs/examples/point-pmf/complex-0_2.in
  331. share/apbs/examples/point-pmf/complex-0_2.pqr
  332. share/apbs/examples/point-pmf/complex-0_3.in
  333. share/apbs/examples/point-pmf/complex-0_3.pqr
  334. share/apbs/examples/point-pmf/complex-0_4.in
  335. share/apbs/examples/point-pmf/complex-0_4.pqr
  336. share/apbs/examples/point-pmf/energy.dat
  337. share/apbs/examples/point-pmf/mol0.pqr
  338. share/apbs/examples/point-pmf/mol1.pqr
  339. share/apbs/examples/point-pmf/mol2.pqr
  340. share/apbs/examples/point-pmf/mol3.pqr
  341. share/apbs/examples/point-pmf/mol4.pqr
  342. share/apbs/examples/point-pmf/point-pmf-0.in
  343. share/apbs/examples/point-pmf/runme.sh
  344. share/apbs/examples/protein-rna/Makefile.am
  345. share/apbs/examples/protein-rna/Makefile.in
  346. share/apbs/examples/protein-rna/PDB/model_outBoxB19.pdb
  347. share/apbs/examples/protein-rna/PDB/model_outNB.pdb
  348. share/apbs/examples/protein-rna/PDB/model_outNpep.pdb
  349. share/apbs/examples/protein-rna/README.md
  350. share/apbs/examples/protein-rna/apbs_unix_dx.py
  351. share/apbs/examples/protein-rna/apbs_win_dx.py
  352. share/apbs/examples/protein-rna/dxmath.txt
  353. share/apbs/examples/protein-rna/fit.py
  354. share/apbs/examples/protein-rna/model_outBoxB19.pqr
  355. share/apbs/examples/protein-rna/model_outNB.pqr
  356. share/apbs/examples/protein-rna/model_outNpep.pqr
  357. share/apbs/examples/protein-rna/postprocess.sh
  358. share/apbs/examples/protein-rna/run_apdx_files.sh
  359. share/apbs/examples/protein-rna/template.txt
  360. share/apbs/examples/protein-rna/test.sh
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  363. share/apbs/examples/smpbe/apbs-smpbe-ion.in
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  409. share/apbs/tools/github/getReleases.sh
  410. share/apbs/tools/github/release-data.py
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  413. share/apbs/tools/manip/inputgen.py
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  415. share/apbs/tools/matlab/MAPBS/License.txt
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  417. share/apbs/tools/matlab/solver/Examples/DNA/DNA.in
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  429. share/apbs/tools/matlab/solver/Examples/Two_ions_complex/TwoIons.in
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  575. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/main.m
  576. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/read_inm.m
  577. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/BoundaryCondition.m
  578. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/BuildA.m
  579. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/comparison.m
  580. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/comparison_reaction_field.m
  581. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/data_parse.m
  582. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/discretization.m
  583. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/dx_export.m
  584. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/gridinf.m
  585. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/main.m
  586. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/read_inm.m
  587. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/BoundaryCondition.m
  588. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/BuildA.m
  589. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/MAPBS.m
  590. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/MATLAB_PB_SOLVER_5.pdf
  591. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/MATLAB_PB_SOLVER_5.tex
  592. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/Readme.txt
  593. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/centerofgrid.m
  594. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/comparison.m
  595. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/comparison_reaction_field.m
  596. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/data_parse.m
  597. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/discretization.m
  598. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/dx_export.m
  599. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/fbc.m
  600. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/gridinf.m
  601. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/parameters.m
  602. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/read_inm.m
  603. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/BoundaryCondition.m
  604. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/BuildA.m
  605. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MAPBS.m
  606. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_APBS.fig
  607. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_APBS.m
  608. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_APBS_FOCUS.fig
  609. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_APBS_FOCUS.m
  610. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_PB_SOLVER_6.pdf
  611. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_PB_SOLVER_6.tex
  612. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_PB_SOLVER_AND_GUI.pdf
  613. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/Readme.txt
  614. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/centerofgrid.m
  615. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/comparison.m
  616. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/comparison_pot.fig
  617. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/comparison_pot.m
  618. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/comparison_reaction_field.m
  619. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/data_parse.m
  620. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/discretization.m
  621. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/dx_export.m
  622. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/energy.m
  623. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/fbc.m
  624. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/gridinf.m
  625. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/inmcreator.fig
  626. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/inmcreator.m
  627. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/mapbs_comparison.m
  628. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/parameters.m
  629. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/read_inm.m
  630. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/BoundaryCondition.m
  631. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/BuildA.m
  632. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MAPBS.m
  633. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.fig
  634. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.m
  635. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS_FOCUS.fig
  636. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS_FOCUS.m
  637. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_PB_SOLVER_AND_GUI.pdf
  638. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/centerofgrid.m
  639. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/comparison_pot.fig
  640. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/comparison_pot.m
  641. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/data_parse.m
  642. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/discretization.m
  643. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/dx_export.m
  644. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/energy.m
  645. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/fbc.m
  646. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/gridinf.m
  647. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/mapbs_comparison.m
  648. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/parameters.m
  649. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/read_inm.m
  650. share/apbs/tools/matlab/solver/README
  651. share/apbs/tools/matlab/solver/born-ion-model-example.pdf
  652. share/apbs/tools/matlab/solver/born-ion-model-example.tex
  653. share/apbs/tools/matlab/solver/two-ions-model-example.pdf
  654. share/apbs/tools/matlab/solver/two-ions-model-example.tex
  655. share/apbs/tools/mesh/analysis.c
  656. share/apbs/tools/mesh/benchmark.c
  657. share/apbs/tools/mesh/del2dx.c
  658. share/apbs/tools/mesh/dx2mol.c
  659. share/apbs/tools/mesh/dx2uhbd.c
  660. share/apbs/tools/mesh/dxmath.c
  661. share/apbs/tools/mesh/mergedx.c
  662. share/apbs/tools/mesh/mergedx2.c
  663. share/apbs/tools/mesh/mgmesh.c
  664. share/apbs/tools/mesh/multivalue.c
  665. share/apbs/tools/mesh/similarity.c
  666. share/apbs/tools/mesh/smooth.c
  667. share/apbs/tools/mesh/tensor2dx.c
  668. share/apbs/tools/mesh/uhbd_asc2bin.c
  669. share/apbs/tools/mesh/value.c
  670. share/apbs/tools/osx/APBS.iconset/icon_128x128.png
  671. share/apbs/tools/osx/APBS.iconset/icon_128x128@2x.png
  672. share/apbs/tools/osx/APBS.iconset/icon_16x16.png
  673. share/apbs/tools/osx/APBS.iconset/icon_16x16@2x.png
  674. share/apbs/tools/osx/APBS.iconset/icon_256x256.png
  675. share/apbs/tools/osx/APBS.iconset/icon_256x256@2x.png
  676. share/apbs/tools/osx/APBS.iconset/icon_32x32.png
  677. share/apbs/tools/osx/APBS.iconset/icon_32x32@2x.png
  678. share/apbs/tools/osx/APBS.iconset/icon_512x512.png
  679. share/apbs/tools/osx/APBS.iconset/icon_512x512@2x.png
  680. share/apbs/tools/osx/apbs_term
  681. share/apbs/tools/osx/info.plist
  682. share/apbs/tools/osx/patch_binary.sh
  683. share/apbs/tools/python/Makefile
  684. share/apbs/tools/python/Makefile.am
  685. share/apbs/tools/python/Makefile.in
  686. share/apbs/tools/python/README
  687. share/apbs/tools/python/apbs.in
  688. share/apbs/tools/python/apbslib.c
  689. share/apbs/tools/python/apbslib.i
  690. share/apbs/tools/python/apbslib_wrap.doc
  691. share/apbs/tools/python/ion.pqr
  692. share/apbs/tools/python/main.py
  693. share/apbs/tools/python/noinput.py
  694. share/apbs/tools/python/vgrid/Makefile
  695. share/apbs/tools/python/vgrid/Makefile.am
  696. share/apbs/tools/python/vgrid/Makefile.in
  697. share/apbs/tools/python/vgrid/README
  698. share/apbs/tools/python/vgrid/average.py
  699. share/apbs/tools/python/vgrid/mergedx.py
  700. share/apbs/tools/python/vgrid/read.py
  701. share/apbs/tools/python/vgrid/vgrid.i
  702. share/apbs/tools/python/vgrid/vgrid.py
  703. share/apbs/tools/python/vgrid/vgridlib.c
  704. share/apbs/tools/visualization/opendx/multipot.cfg
  705. share/apbs/tools/visualization/opendx/multipot.net
  706. share/apbs/tools/visualization/opendx/pot.cfg
  707. share/apbs/tools/visualization/opendx/pot.cm
  708. share/apbs/tools/visualization/opendx/pot.net
  709. share/apbs/tools/visualization/opendx/potacc.cfg
  710. share/apbs/tools/visualization/opendx/potacc.cm
  711. share/apbs/tools/visualization/opendx/potacc.net
  712. share/apbs/tools/visualization/opendx/surface.cfg
  713. share/apbs/tools/visualization/opendx/surface.net
  714. share/apbs/tools/windows/NSI configuration/apbs.nsi
  715. share/apbs/tools/windows/README.txt
  716. share/apbs/tools/windows/command-line support/apbs-cli.bat
  717. share/apbs/tools/windows/configuration headers/apbscfg.h
  718. share/apbs/tools/windows/configuration headers/maloccf.h
  719. share/apbs/tools/windows/visual studio property pages/Debug build properties.props
  720. share/apbs/tools/windows/visual studio property pages/Generic build properties.props
  721. share/apbs/tools/windows/visual studio property pages/Release build properties.props
  722. @owner
  723. @group
  724. @mode
Collapse this list.
Dependency lines:
  • For RUN/BUILD depends:
    • apbs>0:science/apbs
  • For LIB depends:
    • libapbs_generic.so:science/apbs
    • libapbs_mg.so:science/apbs
    • libapbs_pmgc.so:science/apbs
    • libapbs_routines.so:science/apbs
    • libmaloc.so:science/apbs
To install the port: cd /usr/ports/science/apbs/ && make install clean
To add the package: pkg install apbs
PKGNAME: apbs
Flavors: there is no flavor information for this port.
distinfo:
Packages: (move your mouse over the cells for more information)
apbs
ABIlatestquarterly
FreeBSD:11:aarch64-1.5.102
FreeBSD:11:amd641.5.1021.5.102
FreeBSD:11:armv6-1.5.102
FreeBSD:11:i3861.5.1021.5.102
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.5.102
FreeBSD:12:amd641.5.1021.5.102
FreeBSD:12:armv6-1.5.102
FreeBSD:12:armv7-1.5.102
FreeBSD:12:i3861.5.1021.5.102
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-1.5.102
FreeBSD:13:aarch641.5.1021.5.102
FreeBSD:13:amd641.5.1021.5.102
FreeBSD:13:armv61.5.1021.5.102
FreeBSD:13:armv71.5.1021.5.102
FreeBSD:13:i3861.5.1021.5.102
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc641.5.1021.5.102
FreeBSD:14:aarch641.5.102-
FreeBSD:14:amd641.5.102-
FreeBSD:14:armv61.5.102-
FreeBSD:14:armv71.5.102-
FreeBSD:14:i3861.5.102-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.5.102-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/Electrostatics/apbs-pdb2pqr/tar.gz/apbs-1.5-102-g500c1473?dummy=/
Collapse this list.

Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
27 Aug 2020 18:38:00
Original commit files touched by this commit  1.5.102
Revision:546396
tcberner search for other commits by this committer
science/apbs: fix build on current

- upstream seems to have some fixes for gcc10, which could likely be backported
(but failed to apply)
03 May 2019 06:15:44
Original commit files touched by this commit  1.5.102
Revision:500699
yuri search for other commits by this committer
science/apbs: Fix license
03 May 2019 06:14:57
Original commit files touched by this commit  1.5.102
Revision:500698
yuri search for other commits by this committer
New port: science/apbs: Electrostatic and solvation properties for complex
molecules

Number of commits found: 3

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