Current status

bioparser C++ header-only parsing library for several formats in bioinformatics

3.0.12.2 biology =0 3.0.12.2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-01-19 07:56:57

Last Update: 2021-02-03 19:08:28

SVN Revision: 563906

Also Listed In: devel

License: MIT

Description:

Bioparser is a C++ header only parsing library for several formats in bioinformatics (FASTA/Q, MHAP/PAF/SAM), with support for zlib compressed files. WWW: https://github.com/rvaser/bioparser

SVNWeb : Homepage

pkg-plist: as obtained via: make generate-plist

Expand this list (15 items)

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1. /usr/local/share/licenses/bioparser-3.0.12.2/catalog.mk
2. /usr/local/share/licenses/bioparser-3.0.12.2/LICENSE
3. /usr/local/share/licenses/bioparser-3.0.12.2/MIT
4. include/bioparser/fasta_parser.hpp
5. include/bioparser/fastq_parser.hpp
6. include/bioparser/mhap_parser.hpp
7. include/bioparser/paf_parser.hpp
8. include/bioparser/parser.hpp
9. include/bioparser/sam_parser.hpp
10. lib/cmake/bioparser/bioparserConfig.cmake
11. lib/cmake/bioparser/bioparserConfigVersion.cmake
12. lib/cmake/bioparser/bioparserTargets.cmake
13. @owner
14. @group
15. @mode

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Dependency lines:

• bioparser>0:biology/bioparser

To install the port: cd /usr/ports/biology/bioparser/ && make install clean

To add the package: pkg install bioparser

PKGNAME: bioparser

Flavors: there is no flavor information for this port.

distinfo:

TIMESTAMP = 1612378926 SHA256 (rvaser-bioparser-3.0.12-2-g700e82a_GH0.tar.gz) = f2f1e68081ce7f1559ac0e3cb5748b6917ddeb7aa67b8a4c7a11092cfdcb7a4e SIZE (rvaser-bioparser-3.0.12-2-g700e82a_GH0.tar.gz) = 1013702

Packages: (move your mouse over the cells for more information)

bioparser

ABI	latest	quarterly
FreeBSD:11:aarch64	-	-
FreeBSD:11:amd64	3.0.12.2	3.0.12.2
FreeBSD:11:armv6	-	-
FreeBSD:11:i386	3.0.12.2	3.0.12.2
FreeBSD:11:mips	-	-
FreeBSD:11:mips64	-	-
FreeBSD:12:aarch64	-	3.0.12.2
FreeBSD:12:amd64	3.0.12.2	3.0.12.2
FreeBSD:12:armv6	-	-
FreeBSD:12:armv7	-	-
FreeBSD:12:i386	3.0.12.2	3.0.12.2
FreeBSD:12:mips	-	-
FreeBSD:12:mips64	-	-
FreeBSD:12:powerpc64	-	-
FreeBSD:13:aarch64	3.0.12	-
FreeBSD:13:amd64	3.0.12.2	3.0.12.2
FreeBSD:13:armv6	3.0.12	-
FreeBSD:13:armv7	3.0.12	-
FreeBSD:13:i386	3.0.12.2	3.0.12.2
FreeBSD:13:mips	-	-
FreeBSD:13:mips64	-	-
FreeBSD:13:powerpc64	-	-
FreeBSD:14:aarch64	3.0.12.2	-
FreeBSD:14:amd64	3.0.12.2	-
FreeBSD:14:armv6	3.0.12.2	-
FreeBSD:14:armv7	3.0.12.2	-
FreeBSD:14:i386	3.0.12.2	-
FreeBSD:14:mips	-	-
FreeBSD:14:mips64	-	-
FreeBSD:14:powerpc64	3.0.12.2	-

 

Dependencies

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:

1. cmake : devel/cmake
2. ninja : devel/ninja

This port is required by:

for Build

1. biology/rampler
2. biology/spoa

Configuration Options

No options to configure

USES:

cmake

Master Sites:

Expand this list (1 items)

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1. https://codeload.github.com/rvaser/bioparser/tar.gz/3.0.12-2-g700e82a?dummy=/

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biology/bioparser: Update 3.0.12 -> 3.0.12-2

Install target is added.

biology/bioparser: Cosmetic changes

New port: biology/bioparser: C++ header only parsing library for several formats
in bioinformatics

12 vulnerabilities affecting 72 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities

Last updated:
2021-03-28 22:40:29