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Current status

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Port details
avida Auto-adaptive genetic system designed for ALife research
2.12.4 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.12.4Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
search for ports maintained by this maintainer
Port Added: 2002-04-20 15:17:56
Last Update: 2021-01-02 01:46:09
SVN Revision: 559904
License: GPLv3
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (23 items)
Collapse this list.
  1. bin/avida
  2. bin/avida-viewer
  3. lib/avida/avida
  4. lib/avida/avida-viewer
  5. lib/avida/analyze.cfg
  6. lib/avida/avida.cfg
  7. lib/avida/default-gx.org
  8. lib/avida/default-heads-sex.org
  9. lib/avida/default-heads.org
  10. lib/avida/default-smt.org
  11. lib/avida/default-transsmt.org
  12. lib/avida/environment.cfg
  13. lib/avida/events.cfg
  14. lib/avida/experimental.org
  15. lib/avida/instset-experimental.cfg
  16. lib/avida/instset-gx.cfg
  17. lib/avida/instset-heads-sex.cfg
  18. lib/avida/instset-heads.cfg
  19. lib/avida/instset-smt.cfg
  20. lib/avida/instset-transsmt.cfg
  21. /usr/local/share/licenses/avida-2.12.4/catalog.mk
  22. /usr/local/share/licenses/avida-2.12.4/LICENSE
  23. /usr/local/share/licenses/avida-2.12.4/GPLv3
Collapse this list.
Dependency lines:
  • avida>0:biology/avida
To install the port: cd /usr/ports/biology/avida/ && make install clean
To add the package: pkg install avida
PKGNAME: avida
Flavors: there is no flavor information for this port.
distinfo:
Packages: (move your mouse over the cells for more information)
avida
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd642.12.42.12.4
FreeBSD:11:armv6--
FreeBSD:11:i3862.12.42.12.4
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd642.12.42.12.4
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3862.12.42.12.4
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-2.12.4
FreeBSD:13:aarch64--
FreeBSD:13:amd642.12.42.12.4
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3862.12.42.12.4
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc642.12.42.12.4
FreeBSD:14:aarch64--
FreeBSD:14:amd642.12.4-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3862.12.4-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc642.12.4-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
Expand this list (22 items)
Collapse this list.
  1. http://downloads.sourceforge.net/project/avida/avida-stable/2.12.4/
  2. http://excellmedia.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  3. http://freefr.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  4. http://jaist.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  5. http://nchc.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  6. http://netcologne.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  7. http://netix.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  8. http://superb-dca2.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  9. http://superb-sea2.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  10. http://ufpr.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  11. http://vorboss.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  12. https://downloads.sourceforge.net/project/avida/avida-stable/2.12.4/
  13. https://excellmedia.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  14. https://freefr.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  15. https://jaist.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  16. https://nchc.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  17. https://netcologne.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  18. https://netix.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  19. https://superb-dca2.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  20. https://superb-sea2.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  21. https://ufpr.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
  22. https://vorboss.dl.sourceforge.net/project/avida/avida-stable/2.12.4/
Collapse this list.

Number of commits found: 64

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
02 Jan 2021 01:46:09
Original commit files touched by this commit  2.12.4
Revision:559904
linimon search for other commits by this committer
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.

While here, pet portlint (Makevar order).

Approved by:	portmgr (tier-2 blanket)
23 Oct 2019 16:25:10
Original commit files touched by this commit  2.12.4
Revision:515272
pkubaj search for other commits by this committer
biology/avida: unbreak on powerpc64

Builds fine with GCC 9.

Approved by:	mentors (implicit approval)
25 Dec 2018 20:25:40
Original commit files touched by this commit  2.12.4
Revision:488341
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
25 Aug 2018 03:22:18
Original commit files touched by this commit  2.12.4
Revision:477993
tobik search for other commits by this committer
biology/avida: Fix build with Clang 6

avida-core/source/main/cPopulation.cc:2916:20: error: no matching member
function for call to 'push_back'
   
track_founders.push_back(make_pair(organism->GetBioGroup("genotype")->GetID(),
new_genome.AsString()));
    ~~~~~~~~~~~~~~~^~~~~~~~~
/usr/include/c++/v1/vector:688:36: note: candidate function not viable: no known
conversion from 'pair<[...], typename __make_pair_return<cString>::type>' to
'const pair<[...], std::__1::basic_string<char>>' for 1st argument
    _LIBCPP_INLINE_VISIBILITY void push_back(const_reference __x);
                                   ^
/usr/include/c++/v1/vector:691:36: note: candidate function not viable: no known
conversion from 'pair<[...], typename __make_pair_return<cString>::type>' to
'pair<[...], std::__1::basic_string<char>>' for 1st argument
    _LIBCPP_INLINE_VISIBILITY void push_back(value_type&& __x);
                                   ^

http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/avida-2.12.4.log

libs/tcmalloc-1.4/src/sysinfo.cc:832:88: error: invalid suffix on literal; C++11
requires a space between literal and identifier
[-Wreserved-user-defined-literal]
                          "%08"PRIx64"-%08"PRIx64" %c%c%c%c %08"PRIx64"
%02x:%02x %-11"PRId64" %s\n",
                                                                                
      ^
21 Dec 2017 10:23:19
Original commit files touched by this commit  2.12.4
Revision:456901
linimon search for other commits by this committer
Try to bring some consistency to ports that have x86-specific pieces.

 - in general, if we think that the code is not architecture-specific,
   and instead just enables x86 assembler by default, those should
   use BROKEN rather than IGNORE.  This will allow them to be attempted
   with TRYBROKEN.
 - spell i386 as x86.
 - spell asm as assembler.
 - pet portlint.

These changes should have no effect on tier-1 builds.

Approved by:	portmgr (tier-2 blanket)
08 Dec 2017 05:20:01
Original commit files touched by this commit  2.12.4
Revision:455771
linimon search for other commits by this committer
Revert previous fat-fingered commit.  These are the error messages from
benchmarks/libmicro.

Pointy hat to:	self
Approved by:	portmgr (tier-2 blanket)
08 Dec 2017 05:05:12
Original commit files touched by this commit  2.12.4
Revision:455769
linimon search for other commits by this committer
Update errror message on armvX.
30 Nov 2017 06:13:35
Original commit files touched by this commit  2.12.4
Revision:455167  Sanity Test Failure
linimon search for other commits by this committer
For ports that are marked BROKEN on armv6, and also fail to build on
armv7, mark them so.

This is part two of a multipart commit to bring armv7 ports to parity
with armv6.

Approved by:	portmgr (tier-2 blanket)
Obtained from:	lonesome.com -exp run
13 May 2017 03:35:51
Original commit files touched by this commit  2.12.4
Revision:440746
linimon search for other commits by this committer
Mark some ports failing on power64.  In cases where the error message
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
26 Feb 2017 12:56:41
Original commit files touched by this commit  2.12.4
Revision:434867
linimon search for other commits by this committer
Mark various ports as broken on armv6: invokes x86 asm.

Approved by:	portmgr (tier-2 blanket)
19 Nov 2016 14:56:46
Original commit files touched by this commit  2.12.4
Revision:426378
marino search for other commits by this committer
biology/avida: Fix ncurses from ports support
08 Nov 2016 19:29:57
Original commit files touched by this commit  2.12.4
Revision:425758
linimon search for other commits by this committer
The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.
08 Nov 2016 02:48:00
Original commit files touched by this commit  2.12.4
Revision:425664
linimon search for other commits by this committer
Mark broken on the rest of the tier-2 archs: invokes x86 asm.
13 Dec 2015 16:07:28
Original commit files touched by this commit  2.12.4
Revision:403676
swills search for other commits by this committer
mark some of the ports that don't build on powerpc64 for me
02 Sep 2015 12:29:10
Original commit files touched by this commit  2.12.4
Revision:395830
danfe search for other commits by this committer
- Unbreak on PowerPC by using atomicops implementation for Linux and GCC
  __sync_* functions family
- Remove BROKEN_ia64: it never had been first-class architecture, killed
  officially in -CURRENT for a while now
- Sanitize installation commands and sort the knobs while I am here
19 Aug 2015 13:30:00
Original commit files touched by this commit  2.12.4
Revision:394778  Sanity Test Failure
mat search for other commits by this committer
Convert ports to use the options helpers in categories [abc]*, and minor fixes.

Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3412?
27 Jun 2015 14:29:25
Original commit files touched by this commit  2.12.4
Revision:390710
bapt search for other commits by this committer
Use BROKEN helpers
20 Dec 2014 17:27:09
Original commit files touched by this commit  2.12.4
Revision:375014
bapt search for other commits by this committer
Cleanup plist
27 Nov 2013 16:07:52
Original commit files touched by this commit  2.12.4
Revision:335028
jadawin search for other commits by this committer
- Fix build with clang
- Support STAGEDIR

PR:		ports/184242
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
01 Oct 2013 22:00:48
Original commit files touched by this commit  2.12.4
Revision:329003
marino search for other commits by this committer
biology/avida: add <unistd.h>, <typoinfo> for modern compilers
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.12.4
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
14 Aug 2013 22:35:54
Original commit files touched by this commit  2.12.4
Revision:324744  Sanity Test Failure
ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
04 Jun 2013 08:26:03
Original commit files touched by this commit  2.12.4
Revision:319834
miwi search for other commits by this committer
- Fix build with clang

PR:		179215
Submitted by:	Ports Fury
06 May 2013 15:34:18
Original commit files touched by this commit  2.12.4
Revision:317525
bapt search for other commits by this committer
Convert USE_NCURSES by USES=ncurses
Convert USE_READLINE by USES=readline
22 Mar 2013 20:06:15
Original commit files touched by this commit  2.12.4
Revision:314960
makc search for other commits by this committer
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
30 Oct 2012 17:53:39
Original commit files touched by this commit  2.12.4
Revision:306688
pawel search for other commits by this committer
Update to version 2.12.4

PR:		ports/172218
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
17 Jun 2012 20:04:32
Original commit files touched by this commit  2.12.3

sylvio search for other commits by this committer
- Update to version 2.12.3

PR:             ports/168993
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
03 Jun 2012 12:14:38
Original commit files touched by this commit  2.10.0

cs search for other commits by this committer
Set maintainership back to ports@
15 Sep 2011 12:33:27
Original commit files touched by this commit  2.10.0

cs search for other commits by this committer
Change maintainer address to my FreeBSD address

Approved by:    wen@ (mentor)
19 Mar 2011 12:38:54
Original commit files touched by this commit  2.10.0

miwi search for other commits by this committer
- Get Rid MD5 support
17 Sep 2010 09:17:05
Original commit files touched by this commit  2.10.0

linimon search for other commits by this committer
Also broken on sparc64 (and, by implication, ia64).

Hat:            portmgr
21 Aug 2010 00:28:49
Original commit files touched by this commit  2.10.0

sahil search for other commits by this committer
- Update to 2.10.0
- Add LICENSE
- Mark MAKE_JOBS_SAFE
- Eliminate unnecessary patch
- Note new homepage in pkg-descr
- Pass maintainership to submitter

PR:             ports/149827
Submitted by:   C-S <c-s@c-s.li>
01 Apr 2010 05:16:19
Original commit files touched by this commit  2.8.1_1

linimon search for other commits by this committer
Mark various ports as broken or ignore on powerpc.

While here, remove remnants of alpha.
21 Dec 2009 02:19:12
Original commit files touched by this commit  2.8.1_1

dougb search for other commits by this committer
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
22 Aug 2009 00:15:15
Original commit files touched by this commit  2.8.1_1

amdmi3 search for other commits by this committer
- Switch SourceForge ports to the new File Release System: categories starting
with B,C
24 Mar 2009 19:13:32
Original commit files touched by this commit  2.8.1_1

makc search for other commits by this committer
bump PORTREVISION after cmake update
23 Oct 2008 14:13:37
Original commit files touched by this commit  2.8.1

amdmi3 search for other commits by this committer
- Update to 2.8.1

PR:             128057
Submitted by:   Christian Sturm <athaba at inode dot at>
03 Sep 2008 02:57:44
Original commit files touched by this commit  2.4.3

linimon search for other commits by this committer
Reset sf@slappy.org due to maintainer-timeouts and no response to email.

Hat:    portmgr
02 May 2007 07:13:53
Original commit files touched by this commit  2.4.3

edwin search for other commits by this committer
[patch] cleanup non-supported FreeBSD versions

PR:             ports/111724
Submitted by:   Edwin Groothuis <edwin@mavetju.org>
Approved by:    maintainer timeout
10 Aug 2006 23:02:50
Original commit files touched by this commit  2.4.3

edwin search for other commits by this committer
Mark as broken for i386 4.x

PR:             ports/101789
Submitted by:   Scott Flatman <sf@slappy.org>
08 Jul 2006 03:36:37
Original commit files touched by this commit  2.4.3

rafan search for other commits by this committer
- Update to 2.4.3
- Pass maintainersip to submitter

PR:             99901
Submitted by:   Scott Flatman <sf slappy.org>
Approved by:    delphij (mentor, implicit)
03 May 2006 23:26:35
Original commit files touched by this commit  2.0b7

edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
24 Nov 2005 00:04:00
Original commit files touched by this commit  2.0b7

pav search for other commits by this committer
- Add SHA256
12 Apr 2005 03:26:57
Original commit files touched by this commit  2.0b7

obrien search for other commits by this committer
At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.
11 Apr 2005 08:04:41
Original commit files touched by this commit  2.0b7

obrien search for other commits by this committer
Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.
23 Sep 2004 07:10:32
Original commit files touched by this commit  2.0b7

danfe search for other commits by this committer
The build should be fixed now, so remove BROKEN mark.

Approved by:    portmgr (marcus), fjoe (mentor, implicit)
18 Sep 2004 08:12:28
Original commit files touched by this commit  2.0b7

danfe search for other commits by this committer
Unbreak the build on 5.X and -CURRENT.

Reported by:    pointyhat.freebsd.org
Approved by:    portmgr (marcus), fjoe (mentor, implicit)
17 Sep 2004 22:47:50
Original commit files touched by this commit  2.0b7

kris search for other commits by this committer
BROKEN on 5.x: Does not compile

Approved by:    portmgr (self)
21 May 2004 13:24:56
Original commit files touched by this commit  2.0b7

thierry search for other commits by this committer
Add forgotten patches...
21 May 2004 05:29:38
Original commit files touched by this commit  2.0b7

kris search for other commits by this committer
BROKEN: Broken pkg-plist
11 May 2004 05:40:32
Original commit files touched by this commit  2.0b7

thierry search for other commits by this committer
Add a missing BUILD_DEPENDS.

Reported by:    Kris.
10 May 2004 19:26:42
Original commit files touched by this commit  2.0b7

thierry search for other commits by this committer
Upgrade to 2.0b7 and unbreak.
09 May 2004 11:04:05
Original commit files touched by this commit  1.6.0_1

markus search for other commits by this committer
Fix MASTER_SITES
10 Apr 2004 17:26:55
Original commit files touched by this commit  1.6.0_1

trevor search for other commits by this committer
Tidy up whitespace.
17 Mar 2004 18:29:46
Original commit files touched by this commit  1.6.0_1

trevor search for other commits by this committer
SIZEify.
07 Mar 2004 00:18:27
Original commit files touched by this commit  1.6.0_1

linimon search for other commits by this committer
Maintainer reports being unable to look after this port any longer.
Thanks for your efforts in the past.
04 Feb 2004 05:21:48
Original commit files touched by this commit  1.6.0_1

marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
04 Jun 2003 22:43:38
Original commit files touched by this commit  1.6.0

kris search for other commits by this committer
Move inclusion of bsd.port.pre.mk later in the file for conditional BROKEN
tag.  Early inclusion caused problems for some ports, so to be safe I'm
updating all of them.

Pointy hat to:  kris
18 May 2003 09:28:02
Original commit files touched by this commit  1.6.0

kris search for other commits by this committer
BROKEN on 5.1: bad C++
21 Feb 2003 11:01:38
Original commit files touched by this commit  1.6.0

knu search for other commits by this committer
De-pkg-comment.
14 Jan 2003 03:39:21
Original commit files touched by this commit  1.6.0

kris search for other commits by this committer
Add some missing files
03 Nov 2002 23:40:02
Original commit files touched by this commit  1.6.0

edwin search for other commits by this committer
Make biology/avida building on -current again

PR:             ports/44819
Submitted by:   Oliver Lehmann <lehmann@ans-netz.de>
Approved by:    Jeremy Karlson <karlj000@unbc.ca>
19 Sep 2002 02:45:38
Original commit files touched by this commit  1.6.0

kris search for other commits by this committer
BROKEN: Does not build
20 Apr 2002 15:17:46
Original commit files touched by this commit  1.6.0

ijliao search for other commits by this committer
add avida 1.6.0
Avida is an auto-adaptive genetic system designed for ALife research

PR:             37268
Submitted by:   Jeremy Karlson <karlj000@unbc.ca>

Number of commits found: 64

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